Bioinformatics Research Services

Your data is ready.
We take it to publication.

OmicsWare Innovations provides research-grade computational analysis for PIs and PhD scholars — from raw sequencing data to publication-quality figures, tables, and reproducible pipelines.

🧬 RNA-seq Transcriptomics 🔬 Whole Genome Resequencing 🌱 Metagenomics 📊 Publication-Ready Figures 📋 GST-Compliant Invoicing
PhD-level analysis by Dr. Nitesh Kumar Sharma
Former Postdoc, University of Southern California
18+ peer-reviewed publications · 340+ citations
Milestone-based delivery · GST-compliant
Jaipur, India · Serving researchers nationwide

Three core service areas

Every analysis is grounded in published research pipelines, delivered with reproducible code and publication-quality outputs — not generic automated reports.

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RNA-seq Transcriptomics

Comprehensive differential expression and functional analysis for plant, animal, and microbial transcriptomes. From count matrix to manuscript figures.

  • Differential expression analysis (DESeq2 / edgeR)
  • Volcano plots, MA plots, heatmaps
  • GO and KEGG functional enrichment
  • Expression trajectory clustering (Mfuzz / STEM)
  • Transcription factor enrichment analysis
  • Weighted Gene Co-expression Network (WGCNA)
  • Candidate gene identification and heatmaps
  • Multi-comparison UpSet analysis
Most requested
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Whole Genome Resequencing

Population-level and comparative genomic analyses from WGS data. Particularly suited for polyploid species, crop genomics, and evolutionary studies.

  • Variant calling and annotation (GATK / FreeBayes)
  • SNP and InDel filtering and classification
  • Structural variation detection (SVs, CNVs)
  • Genome stabilization analysis
  • Population structure and phylogenomics
  • Selection sweep analysis
  • Comparative genomics across accessions
  • Sub-genome level analysis (polyploids)
Polyploid expertise
🌱

Metagenomics

Microbial community profiling and functional characterization from amplicon and shotgun sequencing data. Soil, gut, environmental, and clinical samples.

  • 16S / ITS amplicon analysis (QIIME2 / DADA2)
  • Taxonomic profiling and diversity metrics
  • Alpha and beta diversity analysis
  • Differential abundance testing
  • Shotgun metagenomics assembly
  • Functional annotation (HUMAnN3 / KEGG)
  • Metagenome-assembled genomes (MAGs)
  • Environmental factor correlation analysis
Amplicon + Shotgun

Simple, transparent, milestone-driven

You share your data and workplan. We send a detailed quotation within 48 hours. Work begins only after mutual agreement — no surprises.

1

Share your project

Email us your data description, analysis goals, and any existing workplan. The more detail, the better the quotation.

2

Receive a quotation

A detailed, itemised quotation with scope, deliverables, timeline milestones, and pricing — within 48 hours.

3

Analysis begins

After mutual agreement on scope and timeline, work starts immediately. You receive milestone updates throughout.

4

Delivery + support

All figures, tables, matrices, and scripts delivered. One revision round included. We stay available beyond delivery.

Not a pipeline. A collaboration.

Generic sequencing company reports are a starting point, not a manuscript. We deliver the depth your publication actually requires.

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Research-grade pipelines

Every analysis is based on published methodologies — the same tools and approaches used in high-impact journals, not automated black-box reports.

🎨

Publication-quality figures

SVG and PDF outputs at journal-ready resolution. Every figure is crafted for the manuscript, not exported from a default template.

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Reproducible scripts

All analyses delivered with fully documented, annotated R/Python scripts. Your results are reproducible, reviewable, and yours to reuse.

🤝

Beyond the invoice

Figure adjustments, table re-filtering, quick questions during manuscript writing — we stay with your project until it's published, not just until it's delivered.

Transparent pricing

Every project receives a detailed, itemised quotation. We offer two engagement models to fit different institutional contexts.

Standard

Service-only engagement

Full analysis, figures, tables, and scripts delivered. GST-compliant invoice issued per milestone. No authorship involved.

Collaborative

With co-authorship

For significant analytical contributions, co-authorship is offered in lieu of a portion of the fee. Standard practice in academic bioinformatics collaborations.

All prices exclusive of GST @ 18% (SAC 998313). Quotation delivered within 48 hours of inquiry.

What you receive

A complete, manuscript-ready package — not just results, but everything needed to submit with confidence.

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Publication figures

SVG + PDF, journal-ready resolution, fully labelled and formatted

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Data tables

Excel spreadsheets per analysis — DEG lists, enrichment results, cluster summaries

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Expression matrices

Raw counts, VST-normalized, and TPM matrices in CSV format

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R/Python scripts

Fully annotated, reproducible scripts for every analysis step

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Methods documentation

Step-by-step workflow notes ready to adapt into your Methods section

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One revision round

One full round of revisions included — figure adjustments, re-filtering, layout changes

Ready to move your data forward?

Share your project details and receive a detailed, itemised quotation within 48 hours. No commitment required to enquire.

Or write directly to info@omicsware.net · Quotation delivered within 48 hours